Chocolate lovers, this one is for you. These Chocolate Thumbprint Cookies are rich, soft, fudgy, and filled with a silky chocolate center that melts in your mouth. Made with a tender cocoa shortbread-style cookie and pressed with a classic thumbprint indentation, these cookies are simple yet elegant and perfect for any season — especially the holidays.
Whether you’re baking for Christmas trays, gifting, creating a festive dessert board, or simply craving something chocolatey and comforting, these cookies are guaranteed to impress. They’re beautiful, bakery-style, and taste like a cross between a brownie and a truffle.
Why You’ll Love Chocolate Thumbprint Cookies
- Rich, deep chocolate flavor
- Soft, tender, brownie-like texture
- Elegant center filled with smooth chocolate ganache
- Quick and easy to make
- No chilling required
- Perfect for holiday baking and gift boxes
- Versatile — customize with different fillings
Why You Should Try This Recipe
Unlike traditional thumbprint cookies that use jam or fruit filling, this chocolate version doubles down on rich cocoa flavor. The cookie base is soft and deeply chocolatey, while the ganache filling adds a creamy, luxurious finish. These are everything you want in a chocolate dessert — simple to make, stunning to present, and irresistibly delicious with every bite.
Ingredients You’ll Need
For the Cookies
- 1 cup unsalted butter, softened
- ¾ cup granulated sugar
- 1 large egg yolk
- 1 teaspoon vanilla extract
- 1 ¼ cups all-purpose flour
- ½ cup unsweetened cocoa powder
- ¼ teaspoon salt
For the Chocolate Filling (Ganache)
- ½ cup semi-sweet chocolate chips
- 2 tablespoons heavy cream
- ½ teaspoon vanilla extract
Optional Toppings
- Crushed peppermint
- Sea salt flakes
- Chopped nuts
- Sprinkles
- White chocolate drizzle
How to Make Chocolate Thumbprint Cookies (Detailed)
1. Cream the Butter and Sugar
Beat softened butter and granulated sugar together until light, creamy, and fluffy.
2. Add Egg Yolk and Vanilla
Mix in egg yolk and vanilla extract until smooth.
3. Combine Dry Ingredients
In a separate bowl, whisk together:
- Flour
- Cocoa powder
- Salt
Add dry ingredients to the wet mixture and mix until a soft dough forms.
4. Shape the Cookies
Roll dough into tablespoon-sized balls.
Place on a lined baking sheet.
Use your thumb or the back of a teaspoon to gently press an indentation into the center of each cookie.
5. Bake
Bake at 350°F (175°C) for 10–12 minutes, or until cookies are set but still soft in the center.
6. Prepare the Ganache Filling
In a microwave-safe bowl, melt chocolate chips and heavy cream in 20–30 second intervals.
Stir until smooth and glossy.
Mix in vanilla extract.
7. Fill the Cookies
Spoon warm ganache into each indentation.
Allow cookies to cool until filling sets.
8. Serve
Enjoy warm or cooled — the centers stay silky and delicious.

Nutritional Information (Estimated per cookie)
- Calories: 135
- Carbohydrates: 13g
- Fat: 8g
- Sugar: 7g
- Protein: 1g
Tips for the Best Results
- Use softened butter for perfect cookie texture.
- Don’t overbake; cookies should remain soft.
- Re-press the indentation after baking if needed.
- Add a pinch of espresso powder to deepen chocolate flavor.
- If dough cracks while making indentations, gently press seams together.
Variations & Substitutions
- Mint Chocolate Thumbprints: Add peppermint extract to ganache.
- Peanut Butter Cup Version: Add a mini peanut butter cup in the center.
- Salted Chocolate: Sprinkle with sea salt flakes.
- White Chocolate Variation: Fill with melted white chocolate or white ganache.
- Nutella Thumbprints: Fill centers with warm Nutella instead of ganache.
What to Serve with These Cookies
- Hot chocolate
- Coffee or espresso
- Milk
- Christmas dessert platters
- Holiday cookie boxes
- Chocolate dessert boards
Common Mistakes to Avoid
- Overmixing dough: Leads to tough cookies.
- Skipping indentation after baking: Some cookies puff; re-press gently.
- Using hot filling: It may spill over; let ganache cool slightly first.
- Dry dough: If dough feels too crumbly, add 1 teaspoon milk to soften.
Storing Tips
- Store at room temperature for 4–5 days.
- Refrigerate for up to 1 week.
- Freeze baked cookies (without filling) for up to 2 months; fill after thawing.
- Freeze dough balls for easy fresh baking.
Conclusion
These Chocolate Thumbprint Cookies are soft, rich, and filled with irresistible chocolate ganache — the ultimate treat for chocolate lovers. They’re elegant, simple to prepare, and perfect for holiday gatherings, gifting, or cozy evenings at home. The combination of the cocoa cookie base and silky chocolate center makes each bite indulgent and memorable.
Recipe FAQ’s
Can I make these ahead?
Yes. Bake and store cookies without filling, then add ganache before serving.
Can I use milk chocolate instead of semi-sweet?
Absolutely — use any chocolate you prefer.
Why did my cookies crack?
Dough may be too cold or pressed too firmly. Press gently.
Can I fill the thumbprint with jam instead of chocolate?
Yes — raspberry or cherry jam pairs beautifully with cocoa.
Can I double the recipe?
Yes, this recipe scales well for large holiday batches.